Gabriel Humpire

Gabriel Humpire

Computer Vision Researcher & ML Engineer

AstraZeneca

Deep Design Systems

Professional Summary

About Me

Computer vision researcher and ML engineer with 15+ years of experience, from publishing in top medical imaging journals to deploying production AI systems in medical diagnostics, drone delivery, and industrial inspection.

PhD from Radboud University Medical Center (world’s #2-ranked ML lab for medical imaging), with research cited over 2600 times on Google Scholar. Winner of Brazil’s national COVID-19 CT segmentation challenge. Currently working as Senior AI Researcher at AstraZeneca and ML Consultant at Deep Design Systems.

Proven track record taking projects end-to-end: from requirements and R&D through training, optimisation, and deployment on embedded hardware (Jetson AGX Xavier, TensorRT, Docker). Expertise spans medical imaging, autonomous drone vision, diffusion models, NeRFs, and LLM fine-tuning.

Education

PhD in Machine Learning for Medical Imaging

Radboud University Medical Center

MSc in Computer Science (Computer Vision)

University of Sao Paulo -

BSc (Hons) in Computer Science

National University of San Agustin

Interests

Computer Vision Deep Learning Medical Imaging Autonomous Systems Production ML Deployment

Experience

  1. Senior AI Researcher

    AstraZeneca
    Applying deep learning and computer vision to pharmaceutical research and drug discovery pipelines.
  2. Senior ML Researcher

    Deep Design Systems
    Developed AI pipelines for 3D product generation from text using diffusion models and neural radiance fields (NeRFs). Implemented multi-view neural rendering to create photorealistic 3D environments and improved pipeline efficiency.
  3. Technical Project Manager of Computer Vision

    Embention
    Led an 8–10 member R&D team to develop an autonomous drone-delivery vision system, achieving a 30% reduction in detection latency through algorithm optimisation. Recovered a project with a 5-month delay risk, delivering on time without scope reduction. Reported directly to CEO and COO.
  4. Senior Data Scientist

    Instech Netherlands B.V.
    Applied state-of-the-art Deep Learning end-to-end: from prototype to optimisation and production deployment. Developed 2D and 3D CT scan algorithms for classification, regression, and segmentation. Deployed models using Docker, TensorRT, and ONNX on embedded hardware including Jetson AGX Xavier.
  5. Mentor of LiveProjects

    Manning Publications Co.
    Guided 10 students to develop Deep Learning projects from data collection, training, testing, and final reporting.
  6. Teaching Assistant

    Radboud University
    Teaching assistant for the Intelligent Systems in Medical Imaging course for Master students. Supervised a Master student’s graduation project.
  7. Team Leader & Software Developer

    BTC & Motorola Mobility
    Created and led a 5-person Android Automation team. Delivered Google acceptance tests 80% faster and 200% more precise than previous approaches. Developed a Macbeth ColorChecker algorithm for the Computer Vision team of Motorola Mobility & Lenovo.
  8. Computer Vision Consultant

    OrkaPod Inc.
    Reduced the false positive rate of a face recognition algorithm using OpenCV.
  9. Researcher and Developer in Computer Vision

    PCT Consulting Sao Paulo - New York
    Engineered a real-time video surveillance prototype to detect and track individuals using Computer Vision.
  10. Assistant Professor and Researcher

    San Pablo Catholic University
    Assistant professor and researcher in Machine Learning and Computer Vision.
  11. Developer and Junior Researcher

    Cathedra CONCYTEC UNSA
    Developed feature extraction algorithms using computer vision. Results published in 3 scientific papers.

Education

  1. PhD in Machine Learning for Medical Imaging

    Radboud University Medical Center
    Thesis on Deep Learning for Localization and Segmentation in Thorax Abdomen CT. Lab ranked #2 in the world for ML applied to medical imaging. Research contributed to publications cited 2600+ times.
    Read Thesis
  2. MSc in Computer Science (Computer Vision)

    University of Sao Paulo -
    Dissertation on Supervised Feature Selection by Ranking to Process Similarity Queries in Medical Imaging. Completed 4 months ahead of deadline.
    Read Dissertation
  3. BSc (Hons) in Computer Science

    National University of San Agustin
    Dissertation on Feature Extraction and Distance Function Selection to Retrieve Microscopic Images of Parasites.
Skills
Computer Vision & Imaging
OpenCV
SimpleITK
TensorRT
ONNX
Deep Learning
Python
TensorFlow
Keras
PyTorch
Engineering & DevOps
C++
Docker
Git
CMake
Data & Analysis
NumPy
Data Science
Scikit-Learn
SQL
Selected Publications
Automatic Segmentation of Battery Cells of Electric Vehicles featured image

Automatic Segmentation of Battery Cells of Electric Vehicles

Automatic detection and segmentation of battery cells of Electric Vehicles.

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Gabriel Humpire
Fully Automatic Volume Measurement of the Spleen at CT Using Deep Learning featured image

Fully Automatic Volume Measurement of the Spleen at CT Using Deep Learning

Automatic spleen segmentation using deep learning. This method reaches radiologist performance.

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Gabriel Humpire
Deep Learning for Localization and Segmentation in Thorax Abdomen CT featured image

Deep Learning for Localization and Segmentation in Thorax Abdomen CT

Deep Learning for Localization and Segmentation in Thorax Abdomen CT.

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Gabriel Humpire
Efficient organ localization using multi-label convolutional neural networks in thorax-abdomen CT scans featured image

Efficient organ localization using multi-label convolutional neural networks in thorax-abdomen CT scans

Automatic organ localization using Deep Learning.

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Gabriel Humpire
All Publications
(2023). Transfer learning from a sparsely annotated dataset of 3D medical images. arXiv, arXiv:2311.05032.
(2023). Kidney abnormality segmentation in thorax-abdomen CT scans. arXiv, arXiv:2309.03383.
(2023). The Liver Tumor Segmentation Benchmark (LiTS). Medical Image Analysis 84, 102680.
(2020). Fully Automatic Volume Measurement of the Spleen at CT Using Deep Learning. Radiology: Artificial Intelligence, 2020;2(4):e190102.
Recent Posts

End-to-End Computer Vision: From Requirements to Deployed System

Reflections on 15 years taking CV systems from research prototype to production - what the gap really looks like, and how to close it.

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Gabriel Humpire

From Research to Production: Deploying Deep Learning on Embedded Hardware

Practical lessons from deploying TensorFlow and PyTorch models to TensorRT on Jetson AGX Xavier - quantisation, latency trade-offs, and ONNX conversion.

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Gabriel Humpire

Winning Brazil's National COVID-19 AI Challenge

How I built an automated CT scan segmentation system that won 1st place in Brazil's government-sponsored national AI competition.

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Gabriel Humpire
News & awards
Winner of the Brazilian COVID-19 Detection/Segmentation Challenge
Government of the State of São Paulo / Brazil ∙ August 2020
Won 1st place in Brazil’s national COVID-19 CT scan segmentation challenge, beating 30 teams. The winning system was interviewed by the University of São Paulo and was one of two finalists in the IdeiaGov innovation challenge.
Languages
100%
Spanish
100%
English
100%
Portuguese
10%
Dutch